Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage (additional file 2)

Authors

Emma F. Jones, University of Alabama at Birmingham
Timothy C. Howton, University of Alabama at Birmingham
Victoria L. Flanary, University of Alabama at Birmingham
Amanda D. Clark, University of Alabama at Birmingham
Brittany N. Lasseigne, University of Alabama at Birmingham

Author ORCID

Brittany N. Lasseigne 0000-0002-1642-8904

Publication Date

8-15-2024

Abstract

Additional file 2. Transcripts per gene table. This supplementary file is a CSV with the number of all transcripts measured for each gene. Columns are as follows: GENEID - Either ENSEMBL gene identification number, if available, or Bambu assigned identification number. Transcript count - number of transcripts counted per gene with more than 0 counts.

Keywords

Genetics, FOS: Biological sciences

Related Datasets

References: 10.1126/science.1230612
References: 10.1038/ncomms3771
References: 10.1093/nar/gkf492
References: 10.1038/nature07509
References: 10.1016/j.cell.2016.07.025
References: 10.1016/j.neuron.2006.09.017
References: 10.1097/wco.0b013e32835ee548
References: 10.1016/j.cell.2014.11.035
References: 10.1038/nature20612
References: 10.1089/jwh.2019.8247
References: 10.1038/s41380-019-0583-1
References: 10.1038/s41587-020-0439-x
References: 10.1101/gr.222976.117
References: 10.1186/s13073-023-01226-y
References: 10.1371/journal.pgen.1010342
References: 10.1186/s13059-014-0550-8
References: 10.12688/f1000research.51749.1
References: 10.1093/bioinformatics/btz247
References: 10.1016/j.jgg.2013.03.003
References: 10.1038/s41386-018-0208-4
References: 10.1126/science.aaa0355
References: 10.1158/0008-5472.can-06-1574
References: 10.1016/j.biopsych.2011.02.033
References: 10.15252/embj.201695630
References: 10.1016/j.ajhg.2013.05.005
References: 10.1001/jamaophthalmol.2014.4266
References: 10.7554/elife.11752
References: 10.1002/cne.21867
References: 10.1371/journal.pone.0016266
References: 10.1038/msb.2012.67
References: 10.1016/j.ajhg.2020.06.002
References: 10.1186/s13104-018-3732-8
References: 10.1016/j.cell.2019.11.020
References: 10.1093/schbul/sby058
References: 10.1016/j.cell.2019.01.043
References: 10.1016/j.celrep.2023.113335
References: 10.1001/archpsyc.62.6.685
References: 10.3389/fgene.2022.912572
References: 10.1038/s41422-022-00730-x
References: 10.1038/s41467-023-42558-y
References: 10.1186/s13041-020-00685-3
References: 10.1093/bioinformatics/bty191
References: 10.1093/bioinformatics/btp352
References: 10.1101/gr.133744.111
References: 10.1093/bioinformatics/btw313
References: 10.1038/s41588-022-01024-z
References: 10.1038/nprot.2009.97
References: 10.1093/nar/gkr1065

Repository

figshare

Distribution License

This work is licensed under a Creative Commons Attribution 4.0 International License.

Access Instructions and Link

This data is available under the CC-BY 4.0 License