CollecTRI Data for Investigation of SETBP1 gene expression and transcription factor activity across human tissues
Author ORCID
Jordan H. Whitlock 0000-0002-9336-545X
Elizabeth J. Wilk 0000-0002-7078-1215
Timothy C. Howton 0000-0002-9423-0135
Amanda D. Clark 0000-0002-1186-3114
Brittany N. Lasseigne 0000-0002-1642-8904
Publication Date
8-7-2023
Abstract
Here we provide the human CollecTRI prior (accessed May 2023) for inference of TF activity across 31 GTEx tissues using multivariate linear modeling method decoupleR.
The `human_prior_tri.csv` includes 1,178 unique TFs (referred to as the source) that target 6,627 unique genes (referred to as targets) to give us 42,595 interactions in the CollecTRI prior input. Interactions are represented as a + or - 1 (mor).
Repository
Zenodo
Distribution License
This work is licensed under a Creative Commons Attribution 4.0 International License.
Access Instructions and Link
This data is available under the CC-BY 4.0 License
Recommended Citation
Whitlock, Jordan H.; Wilk, Elizabeth J.; Howton, Timothy C.; Clark, Amanda D.; and Lasseigne, Brittany, "CollecTRI Data for Investigation of SETBP1 gene expression and transcription factor activity across human tissues" (2023). UAB Research Data Catalog. 104.
https://digitalcommons.library.uab.edu/datasets/104
