Acute depletion of CTCF rewires genome-wide chromatin accessibility (additional file 2)
Authors
- Beisi Xu, St. Jude Children's Research Hospital
- Hong Wang, St. Jude Children's Research Hospital
- Shaela Wright, St. Jude Children's Research Hospital
- Judith Hyle, St. Jude Children's Research Hospital
- Yang Zhang, St. Jude Children's Research Hospital
- Ying Shao, St. Jude Children's Research Hospital
- Mingming Niu, St. Jude Children's Research Hospital
- Yiping Fan, St. Jude Children's Research Hospital
- Wojciech Rosikiewicz, St. Jude Children's Research Hospital
- Mohamed Nadhir Djekidel, St. Jude Children's Research Hospital
- Junmin Peng, St. Jude Children's Research Hospital
- Rui Lu, University of Alabama at Birmingham
- Chunliang Li, St. Jude Children's Research Hospital
Author ORCID
Chunliang Li 0000-0002-5938-5510
Publication Date
8-25-2021
Abstract
Additional file 2: Supplementary Tables-Tables S1. ATAC-seq peak data.
Keywords
Genetics, FOS: Biological sciences
Related Items
References: 10.1016/j.cell.2009.06.001
References: 10.1016/j.cell.2009.06.001
References: 10.1128/mcb.16.6.2802
References: 10.1128/mcb.16.6.2802
References: 10.1101/gad.399506
References: 10.1101/gad.399506
References: 10.1038/nrg3663
References: 10.1038/nrg3663
References: 10.1038/nrm3965
References: 10.1038/nrm3965
References: 10.1016/j.molcel.2015.09.023
References: 10.1016/j.molcel.2015.09.023
References: 10.1016/j.cell.2015.07.038
References: 10.1016/j.cell.2015.07.038
References: 10.1016/j.cell.2014.11.021
References: 10.1016/j.cell.2014.11.021
References: 10.1016/j.celrep.2016.04.085
References: 10.1016/j.celrep.2016.04.085
References: 10.15252/embj.201798083
References: 10.15252/embj.201798083
References: 10.1073/pnas.1717730115
References: 10.1073/pnas.1717730115
References: 10.1038/s41576-018-0060-8
References: 10.1038/s41576-018-0060-8
References: 10.1038/s41586-019-1910-z
References: 10.1038/s41586-019-1910-z
References: 10.1073/pnas.1911708117
References: 10.1073/pnas.1911708117
References: 10.1016/j.celrep.2014.04.004
References: 10.1016/j.celrep.2014.04.004
References: 10.1038/s41586-019-1812-0
References: 10.1038/s41586-019-1812-0
References: 10.1093/nar/gkz462
References: 10.1093/nar/gkz462
References: 10.1101/gad.399506
References: 10.1101/gad.399506
References: 10.1038/emboj.2008.214
References: 10.1038/emboj.2008.214
References: 10.1371/journal.pone.0031416
References: 10.1371/journal.pone.0031416
References: 10.1371/journal.pone.0034915
References: 10.1371/journal.pone.0034915
References: 10.1016/j.celrep.2012.06.014
References: 10.1016/j.celrep.2012.06.014
References: 10.1073/pnas.1019391108
References: 10.1073/pnas.1019391108
References: 10.7554/elife.47898
References: 10.7554/elife.47898
References: 10.1038/nmeth.1401
References: 10.1038/nmeth.1401
References: 10.1073/pnas.1216880109
References: 10.1073/pnas.1216880109
References: 10.1016/j.molcel.2010.05.004
References: 10.1016/j.molcel.2010.05.004
References: 10.1093/nar/gkw377
References: 10.1093/nar/gkw377
References: 10.1093/nar/gkj143
References: 10.1093/nar/gkj143
References: 10.1038/nature09906
References: 10.1038/nature09906
References: 10.1038/nmeth.1906
References: 10.1038/nmeth.1906
References: 10.1186/s13059-015-0736-8
References: 10.1186/s13059-015-0736-8
References: 10.1093/imanum/drs019
References: 10.1093/imanum/drs019
References: 10.1101/gr.136101.111
References: 10.1101/gr.136101.111
References: 10.1016/j.molcel.2006.08.008
References: 10.1016/j.molcel.2006.08.008
References: 10.1186/s13148-020-00869-7
References: 10.1186/s13148-020-00869-7
References: 10.1016/j.celrep.2018.03.056
References: 10.1016/j.celrep.2018.03.056
References: 10.1523/jneurosci.3496-17.2018
References: 10.1523/jneurosci.3496-17.2018
References: 10.1101/gad.236869.113
References: 10.1101/gad.236869.113
References: 10.1093/bioinformatics/btr260
References: 10.1093/bioinformatics/btr260
References: 10.7554/elife.57858
References: 10.7554/elife.57858
References: 10.1186/s12014-019-9237-1
References: 10.1186/s12014-019-9237-1
References: 10.1021/acs.analchem.6b04415
References: 10.1021/acs.analchem.6b04415
References: 10.1186/s13024-020-00384-6
References: 10.1186/s13024-020-00384-6
References: 10.1038/s41467-019-11661-4
References: 10.1038/s41467-019-11661-4
References: 10.1093/nar/gku780
References: 10.1093/nar/gku780
References: 10.1038/nature10442
References: 10.1038/nature10442
References: 10.1038/s41467-018-03149-4
References: 10.1038/s41467-018-03149-4
References: 10.1038/nature11232
References: 10.1038/nature11232
References: 10.1101/gr.245399.118
References: 10.1101/gr.245399.118
References: 10.1186/s13072-019-0280-y
References: 10.1186/s13072-019-0280-y
References: 10.1186/s13059-020-02024-0
References: 10.1186/s13059-020-02024-0
References: 10.1016/j.immuni.2012.02.017
References: 10.1016/j.immuni.2012.02.017
References: 10.1038/nature13302
References: 10.1038/nature13302
References: 10.1074/mcp.o114.039586
References: 10.1074/mcp.o114.039586
References: 10.1021/acs.jproteome.6b00344
References: 10.1021/acs.jproteome.6b00344
References: 10.1002/pmic.201400171
References: 10.1002/pmic.201400171
References: 10.1021/pr500882h
References: 10.1021/pr500882h
References: 10.1038/nature13438
References: 10.1038/nature13438
References: 10.1186/s13073-017-0468-3
References: 10.1186/s13073-017-0468-3
References: 10.1038/s41586-019-1778-y
References: 10.1038/s41586-019-1778-y
References: 10.1038/nprot.2008.73
References: 10.1038/nprot.2008.73
References: 10.1038/nmeth.2688
References: 10.1038/nmeth.2688
References: 10.1186/gb-2008-9-9-r137
References: 10.1186/gb-2008-9-9-r137
References: 10.1186/gb-2014-15-2-r29
References: 10.1186/gb-2014-15-2-r29
References: 10.1093/nar/gkp335
References: 10.1093/nar/gkp335
References: 10.1093/nar/gkw257
References: 10.1093/nar/gkw257
References: 10.1186/1471-2105-10-232
References: 10.1186/1471-2105-10-232
References: 10.1021/pr025556v
References: 10.1021/pr025556v
Is supplement to: 10.1186/s13059-021-02466-0
Repository
figshare
Distribution License

This work is licensed under a Creative Commons Attribution 4.0 International License.
Access Instructions
This data is available under the CC-BY 4.0 License