UAB's Research Data Catalog is an online collection of records describing datasets generated by UAB researchers. The catalog does not directly include or store datasets, but functions as a directory to assist with discovery of datasets deposited in external data repositories such as Zenodo, Dryad, ICPSR, and Figshare.
If you are interested in submitting a dataset link to the Research Data Catalog, please fill out this intake form https://forms.office.com/r/GHzzvq3czL. If you have questions or suggestions, contact Marla Hertz at mihertz@uab.edu or Amy Reese at reesea@uab.edu.
Submissions from 2024
Sex-biased gene expression and gene-regulatory networks of sex-biased adverse event drug targets and drug metabolism genes (additional file 4), Jennifer L. Fisher, Amanda D. Clark, Emma F. Jones, and Brittany N. Lasseigne
Sex-biased gene expression and gene-regulatory networks of sex-biased adverse event drug targets and drug metabolism genes (additional file 5), Jennifer L. Fisher, Amanda D. Clark, Emma F. Jones, and Brittany N. Lasseigne
Sex-biased gene expression and gene-regulatory networks of sex-biased adverse event drug targets and drug metabolism genes (additional file 6), Jennifer L. Fisher, Amanda D. Clark, Emma F. Jones, and Brittany N. Lasseigne
Shared and unique patterns of autonomous human endogenous retrovirus loci transcriptomes in CD14 + monocytes from individuals with physical trauma or infection with COVID-19 (additional file 2), Hyunmin Koo and Casey D. Morrow
Single molecule array measures of LRRK2 kinase activity in serum link Parkinson’s disease severity to peripheral inflammation (additional file 1), Yuan Yuan, Huizhong Li, Kashyap Sreeram, Tuyana Malankhanova, Ravindra Boddu, Samuel Strader, Allison Chang, Nicole Bryant, Talene A. Yacoubian, David G. Standaert, Madalynn Erb, Darren J. Moore, Laurie H. Sanders, Michael W. Lutz, Dmitry Velmeshev, and Andrew B. West
Single molecule array measures of LRRK2 kinase activity in serum link Parkinson’s disease severity to peripheral inflammation (additional file 3), Yuan Yuan, Huizhong Li, Kashyap Sreeram, Tuyana Malankhanova, Ravindra Boddu, Samuel Strader, Allison Chang, Nicole Bryant, Talene A. Yacoubian, David G. Standaert, Madalynn Erb, Darren J. Moore, Laurie H. Sanders, Michael W. Lutz, Dmitry Velmeshev, and Andrew B. West
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 1), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 10), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 11), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 12), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 2), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 3), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 4), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 5), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 6), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 7), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 8), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
snRNA-seq of human cutaneous neurofibromas before and after selumetinib treatment implicates role of altered Schwann cell states, inter-cellular signaling, and extracellular matrix in treatment response (additional file 9), Cameron Church, Christian X. Fay, Emil Kriukov, Hui Liu, Ashley Cannon, Lauren Ashley Baldwin, David K. Crossman, Bruce Korf, Margaret R. Wallace, Andrea M. Gross, Brigitte C. Widemann, Robert A. Kesterson, Petr Baranov, and Deeann Wallis
Space Environmental Effects on Multifunctional Radiation Shielding Materials, Subhayu Sen, Lawrence Heilbronn, Yongzhe Yan, Selvum Pillay, and Haibin Ning
The transition from HIF-1 to HIF-2 during prolonged hypoxia results from reactivation of PHDs and HIF1A mRNA instability (additional file 4), Maciej Jaśkiewicz, Adrianna Moszyńska, Jarosław Króliczewski, Aleksandra Cabaj, Sylwia Bartoszewska, Agata Charzyńska, Magda Gebert, Michał Dąbrowski, James F. Collawn, and Rafal Bartoszewski
The transition from HIF-1 to HIF-2 during prolonged hypoxia results from reactivation of PHDs and HIF1A mRNA instability (additional file 5), Maciej Jaśkiewicz, Adrianna Moszyńska, Jarosław Króliczewski, Aleksandra Cabaj, Sylwia Bartoszewska, Agata Charzyńska, Magda Gebert, Michał Dąbrowski, James F. Collawn, and Rafal Bartoszewski
UAB Data Catalog - FAQ, Marla Hertz and Amy Reese
ZINC15 for Drug Similarity Search, Fuad Al Abir
Submissions from 2023
Adolescent stress impairs postpartum social behavior via anterior insula-prelimbic pathway in mice, Minae Niwa
A Framework to Promote Diversity & Inclusion in Workforce Development in the Southeast States, Mehri Mohebbi, Dimitra Michalaka, and Virginia Sisiopiku
A metadata framework for electronic phenotypes, Matthew Spotnitz, Nripendra Acharya, James J. Cimino, Shawn Murphy, Bahram Namjou-Khales, Nancy Crimmins, Theresa Walunas, Cong Liu, David Crosslin, Barbara Benoit, Elisabeth Rosenthal, Jennifer Pacheco, Anna Ostropolets, Harry Reyes Nieva, Jason Patterson, Lauren Richter, Tiffany Callahan, Ahmed Elhussein, Chao Pang, Krzysztof Kiryluk, Jordan Nestor, Atlas Khan, Sumit Mohan, Evan Minty, Wendy Chung, Wei-Qi Wei, Karthik Natarajan, and Chunhua Weng
Antimicrobial peptides modulate lung injury by altering the intestinal microbiota, Ahmed Abdelgawad, Teodora Nicola, Isaac Martin, Brian A. Halloran, Kosuke Tanaka, Comfort Adegboye, Pankaj Jain, Changchun Ren, Charitharth V. Lal, Namasivayam Ambalavanan, Amy E. O'Connell, Tamás Jilling, and Kent A. Willis
CollecTRI Data for Investigation of SETBP1 gene expression and transcription factor activity across human tissues, Jordan H. Whitlock, Elizabeth J. Wilk, Timothy C. Howton, Amanda D. Clark, and Brittany Lasseigne
Cystic fibrosis autoantibody signatures associate with Staphylococcus aureus lung infection or cystic fibrosis-related diabetes, Ruchi Yadav, Quan-Zhen Li, Hanwen Huang, S. Louis Bridges, J Kahlenberg, Arlene Stecenko, and Balazs Rada
Data for Altered Glia-Neuron Communication in Alzheimer's Disease Affects WNT, p53, and NFkB Signaling Determined by snRNA-seq, Tabea Soelter, Timothy C. Howton, Amanda D. Clark, Vishal H. Oza, and Brittany Lasseigne
Divergent Characteristics of Biomedical Research across Publication Types: A Quantitative Analysis on the Aging-related Research, Chenxing Qian and Qingyue Guo
Heavy metal pollution impacts soil bacterial community structure and antimicrobial resistance at the Birmingham 35th Avenue Superfund Site, James Morris, Anuradha Goswami, and Sarah Adkins-Jablonsky
Height in 180 Alabama referred hemochromatosis probands with HFE p.C282Y homozygosity, James C. Barton, Jackson Clayborn Barton, and Ronald T. Acton
IgG subclasses in 157 referred hemochromatosis probands with HFE p.C282Y homozygosity, James C. Barton, J. Clayborn Barton, Luigi F. Bertoli, and Ronald T. Acton
Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progression (additional file 6), Peifeng Ruan, Jamie L. Todd, Hongyu Zhao, Yi Liu, Richard Vinisko, Julia F. Soellner, Ramona Schmid, Robert J. Kaner, Tracy R. Luckhardt, Megan L. Neely, Imre Noth, Mary Porteous, Rishi Raj, Zeenat Safdar, Mary E. Strek, Christian Hesslinger, Scott M. Palmer, Thomas B. Leonard, and Margaret L. Salisbury
Integrative multi-omics analysis reveals novel idiopathic pulmonary fibrosis endotypes associated with disease progression (additional file 7), Peifeng Ruan, Jamie L. Todd, Hongyu Zhao, Yi Liu, Richard Vinisko, Julia F. Soellner, Ramona Schmid, Robert J. Kaner, Tracy R. Luckhardt, Megan L. Neely, Imre Noth, Mary Porteous, Rishi Raj, Zeenat Safdar, Mary E. Strek, Christian Hesslinger, Scott M. Palmer, Thomas B. Leonard, and Margaret L. Salisbury
investigation of cell-type-specific expression and regulation in Setbp1 (p.S858R) atypical SGS male mice, Jordan H. Whitlock, Tabea M. Soelter, Vishal H. Oza, Elizabeth J. Wilk, Timothy Howton, and Brittany Lasseigne
Liposome_BAM_depletion_4wk, Aubrey M. Schonhoff
Liposome_BAM_depletion_T_cell, Aubrey M. Schonhoff
Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage, Emma F. Jones, Timothy C. Howton, Victoria L. Flanary, Amanda D. Clark, and Brittany Lasseigne
Meta-analysis reveals the vaginal microbiome is a better predictor of earlier than later preterm birth (additional file 2), Caizhi Huang, Craig Gin, Jennifer Fettweis, Betsy Foxman, Bizu Gelaye, David A. MacIntyre, Akila Subramaniam, William Fraser, Negar Tabatabaei, and Benjamin Callahan
Mobility of mPing and its associated elements is regulated by both internal and terminal sequences (additional file 3), Priscilla S. Redd, Stephanie Diaz, David Weidner, Jazmine Benjamin, and C. Nathan Hancock
PANDA cell-type-specific networks for S858R and WT mouse cerebral cortex, Jordan H. Whitlock, Tabea M. Soelter, Timothy C. Howton, Elizabeth J. Wilk, Vishal Oza, and Brittany Lasseigne
PANDA cell-type-specific networks for S858R and WT mouse kidney, Jordan H. WHitlock, Tabea M. Soelter, Timothy C. Howton, Elizabeth J. Wilk, Vishal Oza, and Brittany Lasseigne
Promoting Transportation Equity through Curriculum Interventions, Mehri Mohebbi, Virginia Sisiopiku, and Dimitra Michalaka
Tmem119_CreERT2_IAB_flox_IFNgamma_test, Aubrey Schonhoff
Tmem119Cre_TdTomato_flox_test, Aubrey Schonhoff
Transposon DNA sequences facilitate the tissue-specific horizontal transfer of circulating tumor DNA between human cells, Munevver Cinar, Badri Vardarajan, Arsen Arakelyan, Bassel El-Rayes, and Leon Bernal-Mizrachi
Uncovering local aggregated air quality index with smartphone captured images leveraging efficient deep convolutional neural network, Joyanta Jyoti Mondal, Md. Farhadul Islam, Raima Islam, Nowsin Kabir Rhidi, A Islam, Meem Manab, and Jannatun Noor
