UAB's Research Data Catalog is an online collection of records describing datasets generated by UAB researchers. The catalog does not directly include or store datasets, but functions as a directory to assist with discovery of datasets deposited in external data repositories such as Zenodo, Dryad, ICPSR, and Figshare.
If you are interested in submitting a dataset link to the Research Data Catalog, please fill out this intake form https://forms.office.com/r/GHzzvq3czL. If you have questions or suggestions, contact Marla Hertz at mihertz@uab.edu or Amy Reese at reesea@uab.edu.
Submissions from 2023
Visual outcomes of macula-involving rhegmatogenous retinal detachment in patients with and without age-related macular degeneration (additional file 1), P. Barrett Paulk, Dala Eloubeidi, Mark Johnson, Thomas Swain, John O. Mason, Christine A. Curcio, and Jason N. Crosson
What I have changed my mind about and why, Rachel Yehuda, David Spiegel, Steven Southwick, Lori L. Davis, Thomas C. Neylan, and John H. Krystal
Submissions from 2022
4wk_AAV_SNpc, Aubrey M. Schonhoff
7 day clodronate depletion: brain and meninges, Aubrey M. Schonhoff
Barriers & Facilitators of People With Disabilities in Accepting & Adopting Autonomous Shared Mobility Services (Project A5), Sherrilene Classen, Virginia P. Sisiopiku, Justin R. Mason, Nichole E. Stetten, Wencui Yang, Seung Hwangbo, Brandy McKinney, and Joseph Kwan
CD3_CD68_PD_midbrain_counts, Aubrey M. Schonhoff
CeNGEN Integrated mRNA data and bulk noncoding RNA lookup table, Alec Barrett, Erdem Varol, Alexis Weinreb, Seth R. Taylor, Rebecca McWhirter, Cyril Cros, Manasa Basavaraju, Abigail Poff, John A. Tipps, Maryam Majeed, Berta Vidal, Chen Wang, Eviatar Yemini, Emily A. Bayer, HaoSheng Sun, Oliver Hobert, David M. Miller, and Marc Hammarlund
Comparative transcriptomics in human COPD reveals dysregulated genes uniquely expressed in ferrets (additional file 1), Shah S. Hussain, Yvonne J. Edwards, Emily Falk Libby, Denise Stanford, Stephen A. Byzek, Don D. Sin, Merry-Lynn McDonald, S. Vamsee Raju, and Steven M. Rowe
Comparative transcriptomics in human COPD reveals dysregulated genes uniquely expressed in ferrets (additional file 4), Shah S. Hussain, Yvonne J. Edwards, Emily Falk Libby, Denise Stanford, Stephen A. Byzek, Don D. Sin, Merry-Lynn McDonald, S. Vamsee Raju, and Steven M. Rowe
Comparative transcriptomics in human COPD reveals dysregulated genes uniquely expressed in ferrets (additional file 5), Shah S. Hussain, Yvonne J. Edwards, Emily Falk Libby, Denise Stanford, Stephen A. Byzek, Don D. Sin, Merry-Lynn McDonald, S. Vamsee Raju, and Steven M. Rowe
CX3CR1 CreERT2 TdTomato Fatemap Recombination for brain, meninges, and blood, Aubrey M. Schonhoff
CX3CR1cre_IABflox_stereology, Aubrey M. Schonhoff
CX3CR1cre_IABflox_Tcell_counts, Aubrey M. Schonhoff
Dual CRISPR interference and activation for targeted reactivation of X-linked endogenous FOXP3 in human breast cancer cells (additional file 3), Xuelian Cui, Chao Zhang, Zhifang Xu, Shuaibin Wang, Xin Li, Erica Stringer-Reasor, Sejong Bae, Leiping Zeng, Dehua Zhao, Runhua Liu, Lei S. Qi, and Lizhong Wang
Dual CRISPR interference and activation for targeted reactivation of X-linked endogenous FOXP3 in human breast cancer cells (additional file 4), Xuelian Cui, Chao Zhang, Zhifang Xu, Shuaibin Wang, Xin Li, Erica Stringer-Reasor, Sejong Bae, Leiping Zeng, Dehua Zhao, Runhua Liu, Lei S. Qi, and Lizhong Wang
Dual CRISPR interference and activation for targeted reactivation of X-linked endogenous FOXP3 in human breast cancer cells (additional file 5), Xuelian Cui, Chao Zhang, Zhifang Xu, Shuaibin Wang, Xin Li, Erica Stringer-Reasor, Sejong Bae, Leiping Zeng, Dehua Zhao, Runhua Liu, Lei S. Qi, and Lizhong Wang
Dual CRISPR interference and activation for targeted reactivation of X-linked endogenous FOXP3 in human breast cancer cells (additional file 6), Xuelian Cui, Chao Zhang, Zhifang Xu, Shuaibin Wang, Xin Li, Erica Stringer-Reasor, Sejong Bae, Leiping Zeng, Dehua Zhao, Runhua Liu, Lei S. Qi, and Lizhong Wang
Dual CRISPR interference and activation for targeted reactivation of X-linked endogenous FOXP3 in human breast cancer cells (additional file 7), Xuelian Cui, Chao Zhang, Zhifang Xu, Shuaibin Wang, Xin Li, Erica Stringer-Reasor, Sejong Bae, Leiping Zeng, Dehua Zhao, Runhua Liu, Lei S. Qi, and Lizhong Wang
Dual CRISPR interference and activation for targeted reactivation of X-linked endogenous FOXP3 in human breast cancer cells (additional file 8), Xuelian Cui, Chao Zhang, Zhifang Xu, Shuaibin Wang, Xin Li, Erica Stringer-Reasor, Sejong Bae, Leiping Zeng, Dehua Zhao, Runhua Liu, Lei S. Qi, and Lizhong Wang
Economic Burden of Mental Health Disorders in PCOS-Supplemental Data, Ricardo Azziz
Metagenomics of Parkinson's disease implicates the gut microbiome in multiple disease mechanisms, Zachary D. Wallen, Ayse Demirkan, Guy Twa, Gwendolyn Cohen, Marissa Dean, David Standaert, Timothy Sampson, and Haydeh Payami
Microsatellite genotypes and associated data for: Tetrasporophyte bias coupled with heterozygote deficiency in Antarctic Plocamium sp. (Rhodophyta), Sabrina Heiser, Charles D. Amsler, Solenn Stoeckel, James B. McClintock, Bill Baker, and Stacy Krueger-Hadfield
Pathological α-synuclein recruits LRRK2 expressing pro-inflammatory monocytes to the brain (additional file 2), Enquan Xu, Ravindra Boddu, Hisham A. Abdelmotilib, Arpine Sokratian, Kaela Kelly, Zhiyong Liu, Nicole Bryant, Sidhanth Chandra, Samantha M. Carlisle, Elliot J. Lefkowitz, Ashley S. Harms, Etty N. Benveniste, Talene A. Yacoubian, Laura A. Volpicelli-Daley, David G. Standaert, and Andrew B. West
Pathological α-synuclein recruits LRRK2 expressing pro-inflammatory monocytes to the brain (additional file 3), Enquan Xu, Ravindra Boddu, Hisham A. Abdelmotilib, Arpine Sokratian, Kaela Kelly, Zhiyong Liu, Nicole Bryant, Sidhanth Chandra, Samantha M. Carlisle, Elliot J. Lefkowitz, Ashley S. Harms, Etty N. Benveniste, Talene A. Yacoubian, Laura A. Volpicelli-Daley, David G. Standaert, and Andrew B. West
Phosphodiesterase 10A (PDE10A) as a novel target to suppress β-catenin and RAS signaling in epithelial ovarian cancer (additional file 1), Rebecca M. Borneman, Elaine Gavin, Alla Musiyenko, Wito Richter, Kevin J. Lee, David K. Crossman, Joel F. Andrews, Annelise M. Wilhite, Steven McClellan, Ileana Aragon, Antonio B. Ward, Xi Chen, Adam B. Keeton, Kristy Berry, Gary A. Piazza, Jennifer M. Scalici, and Luciana Madeira da Silva
Return of non-ACMG recommended incidental genetic findings to pediatric patients: considerations and opportunities from experiences in genomic sequencing (additional file 1), Kevin M. Bowling, Michelle L. Thompson, Melissa A. Kelly, Sarah Scollon, Anne M. Slavotinek, Bradford C. Powell, Brian M. Kirmse, Laura G. Hendon, Kyle B. Brothers, Bruce R. Korf, Gregory M. Cooper, John M. Greally, and Anna C. Hurst
Species-specific effects and the ecological role of Programmed cell Death in the microalgae Ankistrodesmus (Sphaeropleales, Selenastraceae), Marcelo Barreto Filho, Helena H. Vieira, James J. Morris, and Inessa L. Bagatini
STRIDE Project I2, Virginia P. Sisiopiku
Tear Film miRNAs and Their Association With Human Dry Eye Disease, Andrew D. Pucker, William Ngo, Cameron K. Postnikoff, Henry Fortinberry, and Jason J. Nichols
Tmem119 IAB flow cytometry dataset, Aubrey M. Schonhoff
UF & UAB's Phase 2 Demonstration Study: Developing a Model to Support Transportation System Decisions considering the Experiences of Drivers of all Age Groups with Autonomous Vehicle Technology (Project A3), Sherrilene Classen, Virginia Sisiopiku, Yang Wencui, Seung Woo Hwangbo, Brandy McKinney, Yuan Li, Jason Rogers, and Justin Mason
Unaltered T cell responses to common antigens in individuals with Parkinson's disease--AIM Assay FCS (1.2/3), Gregory P. Williams, Kaylin Muskat, April Frazier, Yaqian Xu, José Mateus, Alba Grifoni, Ricardo Antunes, Daniela Weiskopf, Amy W. Amara, David G. Standaert, Jennifer G. Goldman, Irene Litvan, Roy N. Alcalay, David Sulzer, Cecilia S. Arlehamn, and Alessandro Sette
Unaltered T cell responses to common antigens in individuals with Parkinson's disease--AIM Assay FCS (2/3), Gregory P. Williams, Kaylin Muskat, April Frazier, Yaqian Xu, José Mateus, Alba Grifoni, Ricardo Antunes, Daniela Weiskopf, Amy W. Amara, David G. Standaert, Jennifer G. Goldman, Irene Litvan, Roy N. Alcalay, David Sulzer, Cecilia S. Arlehamn, and Alessandro Sette
Unaltered T cell responses to common antigens in individuals with Parkinson's disease--AIM Assay FCS Data (1/3), Gregory P. Williams, Kaylin Muskat, April Frazier, Yaqian Xu, José Mateus, Alba Grifoni, Ricardo Antunes, Daniela Weiskopf, Amy W. Amara, David G. Standaert, Jennifer G. Goldman, Irene Litvan, Roy N. Alcalay, David Sulzer, Cecilia S. Arlehamn, and Alessandro Sette
Submissions from 2021
Acute depletion of CTCF rewires genome-wide chromatin accessibility (additional file 2), Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, and Chunliang Li
Acute depletion of CTCF rewires genome-wide chromatin accessibility (additional file 3), Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, and Chunliang Li
Acute depletion of CTCF rewires genome-wide chromatin accessibility (additional file 4), Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, and Chunliang Li
Acute depletion of CTCF rewires genome-wide chromatin accessibility (additional file 5), Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, and Chunliang Li
Acute depletion of CTCF rewires genome-wide chromatin accessibility (additional file 6), Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, and Chunliang Li
Acute depletion of CTCF rewires genome-wide chromatin accessibility (additional file 7), Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, and Chunliang Li
Acute depletion of CTCF rewires genome-wide chromatin accessibility (additional file 8), Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, and Chunliang Li
AllergyMap: An Open Source Corpus of Allergy Mention Normalizations, John Osborne, Amy Wang, and Maria Danila
An international, multi-stakeholder survey about metadata awareness, knowledge, and use in scholarly communications, Laura Paglione, Kathryn Kaiser, Michelle Urberg, Maria Johnsson, Jennifer Kemp, and Alice Meadows
Cortical Connectivity In The Face Of Congenital Structural Changes – A Case Of Homozygous Lamc3 Mutation, Pinar Demirayak, Kader Karli Oguz, Fatma Seyhun Ustun, Buse Merve Urgen, Yasemin Topac, Irtiza Gilani, Tulay Kansu, Serap Saygi, Tayfun Ozcelik, Huseyin Boyaci, and Katja Doerschner
Discovery proteomics by mass spectrometry comparing secreted proteins from young and old mouse lung mesenchymal stromal cells, Diptiman Chanda, Victor Thannickal, and James Mobley
Founder effects shape linkage disequilibrium and genomic diversity of a partially clonal invader, Ben Flanagan, Stacy Krueger-Hadfield, Courtney Murren, Chris Nice, Allan Strand, and Erik Sotka
Genetic architecture of cardiometabolic risks in people living with HIV (additional file 2), Haoxiang Cheng, Anshuman Sewda, Carla Marquez-Luna, Sierra R. White, Bridget M. Whitney, Jessica Williams-Nguyen, Robin M. Nance, Won Jun Lee, Mari M. Kitahata, Michael S. Saag, Amanda Willig, Joseph J. Eron, W. Christopher Mathews, Peter W. Hunt, Richard D. Moore, Allison Webel, Kenneth H. Mayer, Joseph A. Delaney, Paul K. Crane, Heidi M. Crane, Ke Hao, and Inga Peter
Genetic architecture of cardiometabolic risks in people living with HIV (additional file 3), Haoxiang Cheng, Anshuman Sewda, Carla Marquez-Luna, Sierra R. White, Bridget M. Whitney, Jessica Williams-Nguyen, Robin M. Nance, Won Jun Lee, Mari M. Kitahata, Michael S. Saag, Amanda Willig, Joseph J. Eron, W. Christopher Mathews, Peter W. Hunt, Richard D. Moore, Allison Webel, Kenneth H. Mayer, Joseph A. Delaney, Paul K. Crane, Heidi M. Crane, Ke Hao, and Inga Peter
Genetic architecture of cardiometabolic risks in people living with HIV (additional file 4), Haoxiang Cheng, Anshuman Sewda, Carla Marquez-Luna, Sierra R. White, Bridget M. Whitney, Jessica Williams-Nguyen, Robin M. Nance, Won Jun Lee, Mari M. Kitahata, Michael S. Saag, Amanda Willig, Joseph J. Eron, W. Christopher Mathews, Peter W. Hunt, Richard D. Moore, Allison Webel, Kenneth H. Mayer, Joseph A. Delaney, Paul K. Crane, Heidi M. Crane, Ke Hao, and Inga Peter
Genetic architecture of cardiometabolic risks in people living with HIV (additional file 5), Haoxiang Cheng, Anshuman Sewda, Carla Marquez-Luna, Sierra R. White, Bridget M. Whitney, Jessica Williams-Nguyen, Robin M. Nance, Won Jun Lee, Mari M. Kitahata, Michael S. Saag, Amanda Willig, Joseph J. Eron, W. Christopher Mathews, Peter W. Hunt, Richard D. Moore, Allison Webel, Kenneth H. Mayer, Joseph A. Delaney, Paul K. Crane, Heidi M. Crane, Ke Hao, and Inga Peter
